Index _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | W _ _as_nek_value() (in module snek5000.params) _as_python_value() (in module snek5000.params) _check_path_like() (in module snek5000.params) _check_user_param_index() (in module snek5000.params) _complete_info_solver() (snek5000.output.base.Output class method) _complete_params_from_xml_file() (in module snek5000.params) _complete_params_with_default() (snek5000.output.base.Output static method) (snek5000.solvers.base.SimulNek class method) _get_params_nek() (in module snek5000.params) _get_resources() (snek5000.output.base.Output method) _get_subpackages() (snek5000.output.base.Output method) _init_root() (snek5000.info.InfoSolverNek method) _init_sim_repr_maker() (snek5000.output.base.Output method) _load_recorded_user_params() (in module snek5000.params) _Nek5000Make (class in snek5000.make) _reader (snek5000.output.phys_fields.PhysFields property) _save_info_solver_params_xml() (snek5000.output.base.Output method) _save_par_file() (in module snek5000.params) _save_recorded_user_params() (in module snek5000.params) _set_info_solver_classes() (snek5000.output.base.Output class method) _set_internal_sections() (snek5000.solvers.base.SimulNek class method) _str_par_file() (in module snek5000.params) A add_traits() (snek5000.magic.SnekMagics method) append_debug_flags() (in module snek5000.util.smake) archive() (in module snek5000.util.archive) arg_err() (snek5000.magic.SnekMagics method) args (snek5000.util.restart.SnekRestartError attribute) B BaseTemplates (class in snek5000.resources) bisect_nek_files_by_time() (in module snek5000.util.files) build() (snek5000.make._Nek5000Make method) build_nek5000() (snek5000.output.base.Output static method) C camelcase() (in module snek5000.params) change_reader() (snek5000.output.phys_fields.PhysFields method) class_config_rst_doc() (snek5000.magic.SnekMagics class method) class_config_section() (snek5000.magic.SnekMagics class method) class_get_help() (snek5000.magic.SnekMagics class method) class_get_trait_help() (snek5000.magic.SnekMagics class method) class_own_trait_events() (snek5000.magic.SnekMagics class method) class_own_traits() (snek5000.magic.SnekMagics class method) class_print_help() (snek5000.magic.SnekMagics class method) class_trait_names() (snek5000.magic.SnekMagics class method) class_traits() (snek5000.magic.SnekMagics class method) clean_simul() (in module snek5000.util.archive) code (snek5000.util.restart.SimStatus attribute) complete_params_from_par_file() (in module snek5000.params) complete_with_classes() (snek5000.info.InfoSolverMake method) (snek5000.info.InfoSolverNek method) (snek5000.solvers.kth.InfoSolverKTH method) compress_cmd() (in module snek5000.util.archive) config (snek5000.magic.SnekMagics attribute) config_cache (snek5000.make._Nek5000Make attribute) copy() (snek5000.output.base.Output method) coriolis_freq() (in module snek5000.const) create_default_params() (snek5000.solvers.base.SimulNek class method) (snek5000.solvers.kth.SimulKTH class method) create_handler() (in module snek5000.log) create_parser() (in module snek5000.util.restart) (snek5000.util.restart.Restarter method) create_session() (in module snek5000.util.files) create_symlink_start_from_file() (snek5000.solvers.base.SimulNek method) (snek5000.solvers.kth.SimulKTH method) create_symlinks_checkpoint_files() (snek5000.solvers.kth.SimulKTH method) cross_validation_lock (snek5000.magic.SnekMagics property) D data (snek5000.output.phys_fields.PhysFields property) default_option() (snek5000.magic.SnekMagics method) E ensure_config_file() (in module snek5000.config) ensure_env() (in module snek5000.util.smake) entrypoint_grp (snek5000.magic.SnekMagics attribute) env (snek5000.resources.BaseTemplates property) excludes (snek5000.output.base.Output property) exec() (snek5000.make._Nek5000Make method) (snek5000.make.Make method) exec_compress() (in module snek5000.util.archive) exec_tar() (in module snek5000.util.archive) F file (snek5000.make._Nek5000Make attribute) filename_map_user_params (in module snek5000.params) filter() (snek5000.output.base.MissingConfigFilter method) find_configfile() (snek5000.output.base.Output class method) fluidsim() (snek5000.magic.SnekMagics method) fluidsim_help() (snek5000.magic.SnekMagics method) fluidsim_reset() (snek5000.magic.SnekMagics method) format_latex() (snek5000.magic.SnekMagics method) fortran_inc_flags (snek5000.output.base.Output property) G get_base_template() (in module snek5000.resources) (snek5000.resources.BaseTemplates method) get_base_templates() (in module snek5000.resources) (snek5000.resources.BaseTemplates method) get_field_file() (snek5000.output.base.Output method) get_field_to_plot() (snek5000.output.phys_fields.PhysFields method) get_key_field_to_plot() (snek5000.output.phys_fields.PhysFields method) get_nek_source_root() (in module snek5000) (in module snek5000.util) get_path_solver_package() (snek5000.output.base.Output class method) get_paths() (snek5000.output.base.Output method) get_snek_resource() (in module snek5000) get_solver_package() (in module snek5000.solvers) get_solver_short_name() (in module snek5000.solvers) get_status() (in module snek5000) (in module snek5000.util) (in module snek5000.util.restart) get_var (snek5000.output.phys_fields.PhysFields attribute) get_var() (snek5000.output.readers.pymech_.ReaderPymech method) (snek5000.output.readers.pymech_.ReaderPymechStats method) (snek5000.output.readers.ReaderBase method) get_vector_for_plot() (snek5000.output.phys_fields.PhysFields method) H has_to_build() (snek5000.make._Nek5000Make method) has_trait() (snek5000.magic.SnekMagics method) HistoryPoints (class in snek5000.output.history_points) hold_trait_notifications() (snek5000.magic.SnekMagics method) I import_classes() (snek5000.info.InfoSolverMake method) (snek5000.info.InfoSolverNek method) (snek5000.solvers.kth.InfoSolverKTH method) INDEX_USERPARAM (snek5000.output.remaining_clock_time.RemainingClockTime attribute) (snek5000.output.spatial_means.SpatialMeans attribute) info_box() (snek5000.operators.Operators method) InfoSolver (snek5000.solvers.base.SimulNek attribute) (snek5000.solvers.kth.SimulKTH attribute) InfoSolverKTH (class in snek5000.solvers.kth) InfoSolverMake (class in snek5000.info) InfoSolverNek (class in snek5000.info) init_reader() (snek5000.output.phys_fields.PhysFields method) is_defined() (snek5000.magic.SnekMagics method) is_package() (in module snek5000.solvers) L LazyNekFile (class in snek5000.util.files) list() (snek5000.make._Nek5000Make method) (snek5000.make.Make method) load (snek5000.output.phys_fields.PhysFields attribute) load() (in module snek5000) (snek5000.output.history_points.HistoryPoints method) (snek5000.output.print_stdout.PrintStdOut method) (snek5000.output.readers.pymech_.ReaderPymech method) (snek5000.output.readers.pymech_.ReaderPymechStats method) (snek5000.output.readers.ReaderBase method) (snek5000.output.remaining_clock_time.RemainingClockTime method) (snek5000.output.spatial_means.SpatialMeans method) load_1point() (snek5000.output.history_points.HistoryPoints method) load_for_restart() (in module snek5000) (in module snek5000.util.restart) load_ipython_extension() (in module snek5000.magic) load_params() (in module snek5000) (in module snek5000.params) load_params_from_file() (snek5000.solvers.base.SimulNek class method) (snek5000.solvers.kth.SimulKTH class method) load_simul() (in module snek5000) lock (snek5000.make._Nek5000Make attribute) LOCKED (snek5000.util.restart.SimStatus attribute) M magics (snek5000.magic.SnekMagics attribute) main() (in module snek5000.util.restart) (snek5000.util.restart.Restarter method) Make (class in snek5000.make) makefile_usr_obj (snek5000.output.base.Output property) makefile_usr_sources (snek5000.output.base.Output property) max_n_loc (snek5000.operators.Operators property) max_n_seq (snek5000.operators.Operators property) max_nx (snek5000.operators.Operators property) max_ny (snek5000.operators.Operators property) max_nz (snek5000.operators.Operators property) max_order_time (snek5000.operators.Operators property) memory_required() (snek5000.operators.Operators method) message (snek5000.util.restart.SimStatus attribute) MissingConfigFilter (class in snek5000.output.base) module snek5000 snek5000.clusters snek5000.config snek5000.const snek5000.info snek5000.log snek5000.magic snek5000.make snek5000.operators snek5000.output snek5000.output.base snek5000.output.history_points snek5000.output.phys_fields snek5000.output.print_stdout snek5000.output.readers snek5000.output.readers.pymech_ snek5000.output.remaining_clock_time snek5000.output.spatial_means snek5000.params snek5000.resources snek5000.solvers snek5000.solvers.base snek5000.solvers.kth snek5000.util snek5000.util.archive snek5000.util.console snek5000.util.files snek5000.util.restart snek5000.util.smake N name_solver (snek5000.output.base.Output attribute) nb_fields (snek5000.operators.Operators property) next_path() (in module snek5000.util.files) next_power() (in module snek5000.operators) NOT_FOUND (snek5000.util.restart.SimStatus attribute) notify_change() (snek5000.magic.SnekMagics method) nproc_available() (in module snek5000.clusters) O observe() (snek5000.magic.SnekMagics method) OK (snek5000.util.restart.SimStatus attribute) on_trait_change() (snek5000.magic.SnekMagics method) oper (snek5000.output.base.Output attribute) Operators (class in snek5000.operators) options_table (snek5000.magic.SnekMagics attribute) order (snek5000.operators.Operators property) order_cvode (snek5000.operators.Operators property) order_dealiasing (snek5000.operators.Operators property) order_linear (snek5000.operators.Operators property) order_mesh_solver (snek5000.operators.Operators property) order_mhd (snek5000.operators.Operators property) order_out (snek5000.operators.Operators property) order_pressure (snek5000.operators.Operators property) Output (class in snek5000.output.base) P package (snek5000.output.base.Output attribute) Parameters (class in snek5000.params) params (snek5000.output.base.Output attribute) parent (snek5000.magic.SnekMagics attribute) parse_args_from_filename() (in module snek5000.util.archive) parse_options() (snek5000.magic.SnekMagics method) PARTIAL_CONTENT (snek5000.util.restart.SimStatus attribute) path_file (snek5000.output.print_stdout.PrintStdOut property) path_run (snek5000.make._Nek5000Make attribute) (snek5000.output.base.Output attribute) path_session (snek5000.output.base.Output attribute) PhysFields (class in snek5000.output.phys_fields) plot() (snek5000.output.history_points.HistoryPoints method) (snek5000.output.remaining_clock_time.RemainingClockTime method) (snek5000.output.spatial_means.SpatialMeans method) plot_1point() (snek5000.output.history_points.HistoryPoints method) plot_clock_times() (snek5000.output.remaining_clock_time.RemainingClockTime method) plot_dt_cfl() (snek5000.output.print_stdout.PrintStdOut method) plot_nb_iterations() (snek5000.output.print_stdout.PrintStdOut method) post_init() (snek5000.output.base.Output method) post_init_create_additional_source_files() (snek5000.output.base.Output method) print_versions() (in module snek5000.util.console) PrintStdOut (class in snek5000.output.print_stdout) produce_long_str_describing_oper() (snek5000.operators.Operators method) produce_str_describing_oper() (snek5000.operators.Operators method) R ReaderBase (class in snek5000.output.readers) ReaderPymech (class in snek5000.output.readers.pymech_) ReaderPymechStats (class in snek5000.output.readers.pymech_) registered (snek5000.magic.SnekMagics attribute) RemainingClockTime (class in snek5000.output.remaining_clock_time) remove() (in module snek5000.util.archive) RESET_CONTENT (snek5000.util.restart.SimStatus attribute) restart() (snek5000.util.restart.Restarter method) Restarter (class in snek5000.util.restart) S section_names() (snek5000.magic.SnekMagics class method) set_compiler_verbosity() (in module snek5000.util.smake) set_equation_crosssection() (snek5000.output.phys_fields.PhysFields method) set_of_phys_files (snek5000.output.phys_fields.PhysFields attribute) set_trait() (snek5000.magic.SnekMagics method) setup_instance() (snek5000.magic.SnekMagics method) shell (snek5000.magic.SnekMagics attribute) sim (snek5000.output.base.Output attribute) SimReprMaker (snek5000.output.base.Output attribute) SimStatus (class in snek5000.util.restart) Simul (in module snek5000.solvers.base) (in module snek5000.solvers.kth) SimulKTH (class in snek5000.solvers.kth) SimulKTH.Parameters (class in snek5000.solvers.kth) SimulNek (class in snek5000.solvers.base) SimulNek.Parameters (class in snek5000.solvers.base) snek() (snek5000.magic.SnekMagics method) snek5000 module snek5000.clusters module snek5000.config module snek5000.const module snek5000.info module snek5000.log module snek5000.magic module snek5000.make module snek5000.operators module snek5000.output module snek5000.output.base module snek5000.output.history_points module snek5000.output.phys_fields module snek5000.output.print_stdout module snek5000.output.readers module snek5000.output.readers.pymech_ module snek5000.output.remaining_clock_time module snek5000.output.spatial_means module snek5000.params module snek5000.resources module snek5000.solvers module snek5000.solvers.base module snek5000.solvers.kth module snek5000.util module snek5000.util.archive module snek5000.util.console module snek5000.util.files module snek5000.util.restart module snek5000.util.smake module snek_make() (in module snek5000.make) snek_make_nek() (in module snek5000.make) SnekMagics (class in snek5000.magic) SnekRestartError SpatialMeans (class in snek5000.output.spatial_means) start_ipython_load_sim() (in module snek5000.util.console) T tag (snek5000.output.readers.pymech_.ReaderPymech attribute) (snek5000.output.readers.pymech_.ReaderPymechStats attribute) (snek5000.output.readers.ReaderBase attribute) tar_cmd() (in module snek5000.util.archive) tar_name() (in module snek5000.util.archive) targets (snek5000.make._Nek5000Make attribute) text (snek5000.output.print_stdout.PrintStdOut property) time (snek5000.util.files.LazyNekFile property) TOO_EARLY (snek5000.util.restart.SimStatus attribute) trait_defaults() (snek5000.magic.SnekMagics method) trait_events() (snek5000.magic.SnekMagics class method) trait_has_value() (snek5000.magic.SnekMagics method) trait_metadata() (snek5000.magic.SnekMagics method) trait_names() (snek5000.magic.SnekMagics method) trait_values() (snek5000.magic.SnekMagics method) traits() (snek5000.magic.SnekMagics method) U unlock() (in module snek5000.make) unobserve() (snek5000.magic.SnekMagics method) unobserve_all() (snek5000.magic.SnekMagics method) update_config() (snek5000.magic.SnekMagics method) update_snakemake_config() (snek5000.output.base.Output class method) W with_traceback() (snek5000.util.restart.SnekRestartError method) write_box() (snek5000.operators.Operators method) (snek5000.output.base.Output method) write_compile_sh() (snek5000.output.base.Output static method) write_makefile_usr() (snek5000.output.base.Output method) write_size() (snek5000.operators.Operators method) (snek5000.output.base.Output method) write_snakemake_config() (snek5000.output.base.Output method)